No, the 3rd party section contains templates to generate a derived class per entity.
However, I think the problem is best solved using an include template for entityAdapter.template, in which you place code like:
<[If StringValueEquals CurrentEntityName "Order"]>
<# CustomOrderCode #>
<[EndIf]>
<[If StringValueEquals CurrentEntityName "Customer"]>
<# CustomCustomerCode #>
<[EndIf]>
etc...
then, create per include a new file, add the code to that file and bind it to the template id you mentioned in the include file you'll bind to Custom_EntityAdapterTemplate, in a new template set config (based on an existing, so you can just add template bindings, see template studio tutorials).
This will bridge the time period until I've added the 'preserve user code in generated code' feature to the code generators in the upcoming upgrade which I hope will be finished (in beta) at the end of february.